1. Test Modules
  2. Network Diagram
  3. Training Characteristics
    1. Input Learning
      1. Gradient Descent
      2. Conjugate Gradient Descent
      3. Limited-Memory BFGS
    2. Results
  4. Results

Subreport: Logs for com.simiacryptus.ref.lang.ReferenceCountingBase

Test Modules

Network Diagram

This is a network apply the following layout:

LayerTests.java:203 executed in 10.01 seconds (0.000 gc):

    return Graphviz.fromGraph((Graph) TestUtil.toGraph(((DAGNetwork) layer).addRef())).height(400).width(600)
        .render(Format.PNG).toImage();
java.lang.reflect.InvocationTargetException 
java.lang.RuntimeException: java.lang.reflect.InvocationTargetException
at com.simiacryptus.util.Util.throwException(Util.java:502)
at com.simiacryptus.notebook.MarkdownNotebookOutput.lambda$eval$dc58be99$1(MarkdownNotebookOutput.java:659)
at com.simiacryptus.util.test.SysOutInterceptor.withOutput(SysOutInterceptor.java:102)
at com.simiacryptus.notebook.MarkdownNotebookOutput.eval(MarkdownNotebookOutput.java:649)
at com.simiacryptus.notebook.NotebookOutput.eval(NotebookOutput.java:125)
at com.simiacryptus.mindseye.test.unit.LayerTests.renderGraph(LayerTests.java:203)
at com.simiacryptus.mindseye.test.unit.LayerTests.run(LayerTests.java:415)
at com.simiacryptus.mindseye.test.LayerTestBase.trainingTest(LayerTestBase.java:95)
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at org.junit.platform.commons.util.ReflectionUtils.invokeMethod(ReflectionUtils.java:686)
at org.junit.jupiter.engine.execution.MethodInvocation.proceed(MethodInvocation.java:60)
at org.junit.jupiter.engine.execution.InvocationInterceptorChain$ValidatingInvocation.proceed(InvocationInterceptorChain.java:131)
at org.junit.jupiter.engine.extension.TimeoutInvocation.proceed(TimeoutInvocation.java:46)
at org.junit.jupiter.engine.extension.TimeoutExtension.intercept(TimeoutExtension.java:149)
at org.junit.jupiter.engine.extension.TimeoutExtension.interceptTestableMethod(TimeoutExtension.java:140)
at org.junit.jupiter.engine.extension.TimeoutExtension.interceptTestMethod(TimeoutExtension.java:84)
at org.junit.jupiter.engine.execution.ExecutableInvoker$ReflectiveInterceptorCall.lambda$ofVoidMethod$0(ExecutableInvoker.java:115)
at org.junit.jupiter.engine.execution.ExecutableInvoker.lambda$invoke$0(ExecutableInvoker.java:105)
at org.junit.jupiter.engine.execution.InvocationInterceptorChain$InterceptedInvocation.proceed(InvocationInterceptorChain.java:106)
at org.junit.jupiter.engine.execution.InvocationInterceptorChain.proceed(InvocationInterceptorChain.java:64)
at org.junit.jupiter.engine.execution.InvocationInterceptorChain.chainAndInvoke(InvocationInterceptorChain.java:45)
at org.junit.jupiter.engine.execution.InvocationInterceptorChain.invoke(InvocationInterceptorChain.java:37)
at org.junit.jupiter.engine.execution.ExecutableInvoker.invoke(ExecutableInvoker.java:104)
at org.junit.jupiter.engine.execution.ExecutableInvoker.invoke(ExecutableInvoker.java:98)
at org.junit.jupiter.engine.descriptor.TestMethodTestDescriptor.lambda$invokeTestMethod$6(TestMethodTestDescriptor.java:205)
at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
at org.junit.jupiter.engine.descriptor.TestMethodTestDescriptor.invokeTestMethod(TestMethodTestDescriptor.java:201)
at org.junit.jupiter.engine.descriptor.TestMethodTestDescriptor.execute(TestMethodTestDescriptor.java:137)
at org.junit.jupiter.engine.descriptor.TestMethodTestDescriptor.execute(TestMethodTestDescriptor.java:71)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$5(NodeTestTask.java:135)
at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$7(NodeTestTask.java:125)
at org.junit.platform.engine.support.hierarchical.Node.around(Node.java:135)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$8(NodeTestTask.java:123)
at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.executeRecursively(NodeTestTask.java:122)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.execute(NodeTestTask.java:80)
at java.util.ArrayList.forEach(Unknown Source)
at org.junit.platform.engine.support.hierarchical.SameThreadHierarchicalTestExecutorService.invokeAll(SameThreadHierarchicalTestExecutorService.java:38)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$5(NodeTestTask.java:139)
at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$7(NodeTestTask.java:125)
at org.junit.platform.engine.support.hierarchical.Node.around(Node.java:135)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$8(NodeTestTask.java:123)
at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.executeRecursively(NodeTestTask.java:122)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.execute(NodeTestTask.java:80)
at java.util.ArrayList.forEach(Unknown Source)
at org.junit.platform.engine.support.hierarchical.SameThreadHierarchicalTestExecutorService.invokeAll(SameThreadHierarchicalTestExecutorService.java:38)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$5(NodeTestTask.java:139)
at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$7(NodeTestTask.java:125)
at org.junit.platform.engine.support.hierarchical.Node.around(Node.java:135)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.lambda$executeRecursively$8(NodeTestTask.java:123)
at org.junit.platform.engine.support.hierarchical.ThrowableCollector.execute(ThrowableCollector.java:73)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.executeRecursively(NodeTestTask.java:122)
at org.junit.platform.engine.support.hierarchical.NodeTestTask.execute(NodeTestTask.java:80)
at org.junit.platform.engine.support.hierarchical.SameThreadHierarchicalTestExecutorService.submit(SameThreadHierarchicalTestExecutorService.java:32)
at org.junit.platform.engine.support.hierarchical.HierarchicalTestExecutor.execute(HierarchicalTestExecutor.java:57)
at org.junit.platform.engine.support.hierarchical.HierarchicalTestEngine.execute(HierarchicalTestEngine.java:51)
at org.junit.platform.launcher.core.DefaultLauncher.execute(DefaultLauncher.java:248)
at org.junit.platform.launcher.core.DefaultLauncher.lambda$execute$5(DefaultLauncher.java:211)
at org.junit.platform.launcher.core.DefaultLauncher.withInterceptedStreams(DefaultLauncher.java:226)
at org.junit.platform.launcher.core.DefaultLauncher.execute(DefaultLauncher.java:199)
at org.junit.platform.launcher.core.DefaultLauncher.execute(DefaultLauncher.java:141)
at org.junit.platform.runner.JUnitPlatform.run(JUnitPlatform.java:139)
at com.simiacryptus.util.test.MacroTestRunner.runTest(MacroTestRunner.java:94)
at com.simiacryptus.util.test.MacroTestRunner.lambda$null$8bb7732f$1(MacroTestRunner.java:177)
at com.simiacryptus.aws.TendrilControl.lambda$null$0(TendrilControl.java:86)
at java.lang.Thread.run(Unknown Source)
Caused by: java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
at java.lang.reflect.Method.invoke(Unknown Source)
at com.simiacryptus.ref.lang.RefUtil$RefWrapperHandler.invoke(RefUtil.java:238)
at com.sun.proxy.$Proxy45.get(Unknown Source)
at com.simiacryptus.notebook.MarkdownNotebookOutput.lambda$eval$dc58be99$1(MarkdownNotebookOutput.java:657)
... 71 more
Caused by: guru.nidi.graphviz.engine.GraphvizException: Engine took too long to respond, try setting a higher timout
at guru.nidi.graphviz.engine.GraphvizServerEngine.execute(GraphvizServerEngine.java:49)
at guru.nidi.graphviz.engine.Graphviz.execute(Graphviz.java:246)
at guru.nidi.graphviz.engine.Renderer.execute(Renderer.java:134)
at guru.nidi.graphviz.engine.Renderer.toImage(Renderer.java:105)
at com.simiacryptus.mindseye.test.unit.LayerTests.lambda$renderGraph$12c65ef7$1(LayerTests.java:205)
... 78 more

Using Seed 5036567036715197440

Training Characteristics

Input Learning

In this apply, we use a network to learn this target input, given it's pre-evaluated output:

TrainingTester.java:332 executed in 0.00 seconds (0.000 gc):

    return RefArrays.stream(RefUtil.addRef(input_target)).flatMap(RefArrays::stream).map(x -> {
      try {
        return x.prettyPrint();
      } finally {
        x.freeRef();
      }
    }).reduce((a, b) -> a + "\n" + b).orElse("");

Returns

    [ 0.08, 1.556, 0.496, -0.384, -0.068, -1.256, 0.788, -0.888, ... ]
    [ -1.54, 1.628, 0.972, -0.128, 0.82, -1.724, 1.108, 1.612, ... ]
    [ 1.764, -0.608, -0.012, 1.876, 0.092, -0.384, -1.424, -0.712, ... ]
    [ 0.972, 1.764, 0.788, 0.048, 0.7, 0.496, -0.888, 1.912, ... ]
    [ -1.72, 0.972, 0.996, -0.804, -1.34, 1.704, -1.476, -1.256, ... ]

Gradient Descent

First, we train using basic gradient descent method apply weak line search conditions.

TrainingTester.java:480 executed in 0.11 seconds (0.000 gc):

    IterativeTrainer iterativeTrainer = new IterativeTrainer(trainable.addRef());
    try {
      iterativeTrainer.setLineSearchFactory(label -> new ArmijoWolfeSearch());
      iterativeTrainer.setOrientation(new GradientDescent());
      iterativeTrainer.setMonitor(TrainingTester.getMonitor(history));
      iterativeTrainer.setTimeout(30, TimeUnit.SECONDS);
      iterativeTrainer.setMaxIterations(250);
      iterativeTrainer.setTerminateThreshold(0);
      return iterativeTrainer.run();
    } finally {
      iterativeTrainer.freeRef();
    }
Logging 
Reset training subject: 658828142671
Final threshold in iteration 0: 0.0 (> 0.0) after 0.097s (< 30.000s)

Returns

    0.0

This training apply resulted in the following configuration:

TrainingTester.java:610 executed in 0.00 seconds (0.000 gc):

    RefList<double[]> state = network.state();
    assert state != null;
    String description = state.stream().map(RefArrays::toString).reduce((a, b) -> a + "\n" + b)
        .orElse("");
    state.freeRef();
    return description;

Returns

And regressed input:

TrainingTester.java:622 executed in 0.00 seconds (0.000 gc):

    return RefArrays.stream(RefUtil.addRef(data)).flatMap(x -> {
      return RefArrays.stream(x);
    }).limit(1).map(x -> {
      String temp_18_0015 = x.prettyPrint();
      x.freeRef();
      return temp_18_0015;
    }).reduce((a, b) -> a + "\n" + b).orElse("");

Returns

    [ -1.484, -0.384, -0.768, 0.184, 1.876, 1.628, 1.916, 1.208, ... ]

To produce the following output:

TrainingTester.java:633 executed in 0.00 seconds (0.000 gc):

    Result[] array = ConstantResult.batchResultArray(pop(RefUtil.addRef(data)));
    @Nullable
    Result eval = layer.eval(array);
    assert eval != null;
    TensorList tensorList = Result.getData(eval);
    String temp_18_0016 = tensorList.stream().limit(1).map(x -> {
      String temp_18_0017 = x.prettyPrint();
      x.freeRef();
      return temp_18_0017;
    }).reduce((a, b) -> a + "\n" + b).orElse("");
    tensorList.freeRef();
    return temp_18_0016;

Returns

    [ 4.431149175066544 ]

Conjugate Gradient Descent

First, we use a conjugate gradient descent method, which converges the fastest for purely linear functions.

TrainingTester.java:452 executed in 0.02 seconds (0.000 gc):

    IterativeTrainer iterativeTrainer = new IterativeTrainer(trainable.addRef());
    try {
      iterativeTrainer.setLineSearchFactory(label -> new QuadraticSearch());
      iterativeTrainer.setOrientation(new GradientDescent());
      iterativeTrainer.setMonitor(TrainingTester.getMonitor(history));
      iterativeTrainer.setTimeout(30, TimeUnit.SECONDS);
      iterativeTrainer.setMaxIterations(250);
      iterativeTrainer.setTerminateThreshold(0);
      return iterativeTrainer.run();
    } finally {
      iterativeTrainer.freeRef();
    }
Logging 
Reset training subject: 658941257124
Final threshold in iteration 0: 0.0 (> 0.0) after 0.015s (< 30.000s)

Returns

    0.0

This training apply resulted in the following configuration:

TrainingTester.java:610 executed in 0.00 seconds (0.000 gc):

    RefList<double[]> state = network.state();
    assert state != null;
    String description = state.stream().map(RefArrays::toString).reduce((a, b) -> a + "\n" + b)
        .orElse("");
    state.freeRef();
    return description;

Returns

And regressed input:

TrainingTester.java:622 executed in 0.00 seconds (0.000 gc):

    return RefArrays.stream(RefUtil.addRef(data)).flatMap(x -> {
      return RefArrays.stream(x);
    }).limit(1).map(x -> {
      String temp_18_0015 = x.prettyPrint();
      x.freeRef();
      return temp_18_0015;
    }).reduce((a, b) -> a + "\n" + b).orElse("");

Returns

    [ -1.484, -0.384, -0.768, 0.184, 1.876, 1.628, 1.916, 1.208, ... ]

To produce the following output:

TrainingTester.java:633 executed in 0.00 seconds (0.000 gc):

    Result[] array = ConstantResult.batchResultArray(pop(RefUtil.addRef(data)));
    @Nullable
    Result eval = layer.eval(array);
    assert eval != null;
    TensorList tensorList = Result.getData(eval);
    String temp_18_0016 = tensorList.stream().limit(1).map(x -> {
      String temp_18_0017 = x.prettyPrint();
      x.freeRef();
      return temp_18_0017;
    }).reduce((a, b) -> a + "\n" + b).orElse("");
    tensorList.freeRef();
    return temp_18_0016;

Returns

    [ 4.431149175066544 ]

Limited-Memory BFGS

Next, we apply the same optimization using L-BFGS, which is nearly ideal for purely second-order or quadratic functions.

TrainingTester.java:509 executed in 0.01 seconds (0.000 gc):

    IterativeTrainer iterativeTrainer = new IterativeTrainer(trainable.addRef());
    try {
      iterativeTrainer.setLineSearchFactory(label -> new ArmijoWolfeSearch());
      iterativeTrainer.setOrientation(new LBFGS());
      iterativeTrainer.setMonitor(TrainingTester.getMonitor(history));
      iterativeTrainer.setTimeout(30, TimeUnit.SECONDS);
      iterativeTrainer.setIterationsPerSample(100);
      iterativeTrainer.setMaxIterations(250);
      iterativeTrainer.setTerminateThreshold(0);
      return iterativeTrainer.run();
    } finally {
      iterativeTrainer.freeRef();
    }
Logging 
Reset training subject: 658966646262
Final threshold in iteration 0: 0.0 (> 0.0) after 0.009s (< 30.000s)

Returns

    0.0

This training apply resulted in the following configuration:

TrainingTester.java:610 executed in 0.00 seconds (0.000 gc):

    RefList<double[]> state = network.state();
    assert state != null;
    String description = state.stream().map(RefArrays::toString).reduce((a, b) -> a + "\n" + b)
        .orElse("");
    state.freeRef();
    return description;

Returns

And regressed input:

TrainingTester.java:622 executed in 0.00 seconds (0.000 gc):

    return RefArrays.stream(RefUtil.addRef(data)).flatMap(x -> {
      return RefArrays.stream(x);
    }).limit(1).map(x -> {
      String temp_18_0015 = x.prettyPrint();
      x.freeRef();
      return temp_18_0015;
    }).reduce((a, b) -> a + "\n" + b).orElse("");

Returns

    [ -1.484, -0.384, -0.768, 0.184, 1.876, 1.628, 1.916, 1.208, ... ]

To produce the following output:

TrainingTester.java:633 executed in 0.00 seconds (0.000 gc):

    Result[] array = ConstantResult.batchResultArray(pop(RefUtil.addRef(data)));
    @Nullable
    Result eval = layer.eval(array);
    assert eval != null;
    TensorList tensorList = Result.getData(eval);
    String temp_18_0016 = tensorList.stream().limit(1).map(x -> {
      String temp_18_0017 = x.prettyPrint();
      x.freeRef();
      return temp_18_0017;
    }).reduce((a, b) -> a + "\n" + b).orElse("");
    tensorList.freeRef();
    return temp_18_0016;

Returns

    [ 4.431149175066544 ]

TrainingTester.java:432 executed in 0.00 seconds (0.000 gc):

    return TestUtil.compare(title + " vs Iteration", runs);
Logging 
No Data

TrainingTester.java:435 executed in 0.00 seconds (0.000 gc):

    return TestUtil.compareTime(title + " vs Time", runs);
Logging 
No Data

Results

TrainingTester.java:255 executed in 0.02 seconds (0.000 gc):

    return grid(inputLearning, modelLearning, completeLearning);

Returns

Result

TrainingTester.java:258 executed in 0.00 seconds (0.000 gc):

    return new ComponentResult(null == inputLearning ? null : inputLearning.value,
        null == modelLearning ? null : modelLearning.value, null == completeLearning ? null : completeLearning.value);

Returns

    {"input":{ "LBFGS": { "type": "NonConverged", "value": NaN }, "CjGD": { "type": "NonConverged", "value": NaN }, "GD": { "type": "NonConverged", "value": NaN } }, "model":null, "complete":null}

LayerTests.java:425 executed in 0.00 seconds (0.000 gc):

    throwException(exceptions.addRef());

Results

detailsresult
{"input":{ "LBFGS": { "type": "NonConverged", "value": NaN }, "CjGD": { "type": "NonConverged", "value": NaN }, "GD": { "type": "NonConverged", "value": NaN } }, "model":null, "complete":null}OK
 
  {
    "result": "OK",
    "performance": {
      "execution_time": "10.465",
      "gc_time": "0.145"
    },
    "created_on": 1586735236609,
    "file_name": "trainingTest",
    "report": {
      "simpleName": "Basic",
      "canonicalName": "com.simiacryptus.mindseye.layers.java.AutoEntropyLayerTest.Basic",
      "link": "https://github.com/SimiaCryptus/mindseye-java/tree/93db34cedee48c0202777a2b25deddf1dfaf5731/src/test/java/com/simiacryptus/mindseye/layers/java/AutoEntropyLayerTest.java",
      "javaDoc": ""
    },
    "training_analysis": {
      "input": {
        "LBFGS": {
          "type": "NonConverged",
          "value": "NaN"
        },
        "CjGD": {
          "type": "NonConverged",
          "value": "NaN"
        },
        "GD": {
          "type": "NonConverged",
          "value": "NaN"
        }
      }
    },
    "archive": "s3://code.simiacrypt.us/tests/com/simiacryptus/mindseye/layers/java/AutoEntropyLayer/Basic/trainingTest/202004124716",
    "id": "8a79c9a1-634e-47bd-9d9f-63e800f3273c",
    "report_type": "Components",
    "display_name": "Comparative Training",
    "target": {
      "simpleName": "AutoEntropyLayer",
      "canonicalName": "com.simiacryptus.mindseye.layers.java.AutoEntropyLayer",
      "link": "https://github.com/SimiaCryptus/mindseye-java/tree/93db34cedee48c0202777a2b25deddf1dfaf5731/src/main/java/com/simiacryptus/mindseye/layers/java/AutoEntropyLayer.java",
      "javaDoc": ""
    }
  }